test_trio_dnm3 needs the trio-dnm3 plugin, but unlike every other plugin test it is not guarded by --plugins, so it fails when bcftools is built with --disable-bcftools-plugins. --- a/test/test.pl +++ b/test/test.pl @@ -2471,5 +2471,6 @@ sub test_trio_dnm3 { my ($opts,%args) = @_; + if ( !$$opts{test_plugins} ) { return; } test_cmd($opts,%args,cmd=>qq[export BCFTOOLS_PLUGINS=$$opts{bin}/plugins; $$opts{path}/trio-dnm3/test.sh $$opts{bin}/bcftools],out=>'trio-dnm3.1.out'); }